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Showing posts from August, 2014

Why Biological Systems Suddenly Change State: An Intuitive Guide to Freidlin–Wentzell Theory

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  Stochasticity is ubiquitous in biology and neuroscience, manifesting in various forms, including ion channel noise, synaptic variability, gene regulatory fluctuations, noisy population dynamics, and more. Many biological systems spend long periods in a stable “state” and only rarely transition to another state due to noise. For instance, a neuron typically remains inactive but may occasionally trigger a spontaneous spike. Similarly, a gene can switch from the OFF state to the ON state due to rare bursts of transcription factors. Cells can also transition out of metabolic or epigenetic states, populations might shift between different ecological equilibria, and a viral infection can fluctuate between phases of control and uncontrollability. Freidlin–Wentzell theory provides a mathematically rigorous framework to study these phenomena when noise is small but nonzero . It tells you, firstly, h ow likely rare transitions are,    secondly,   h ow fast they occ...
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Automatic eye fixations identification based on analysis of variance and covariance

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Abstract : Eye movement is the simplest and repetitive movement that enables humans to interact with the environment. The common daily activities, such as reading a book or watching television, involve this natural activity, which consists of rapidly shifting our gaze from one region to another. In clinical application, the identification of the main components of eye movement during visual exploration, such as fixations and saccades , is the objective of the analysis of eye movements: however, in patients affected by motor control disorder the identification of fixation is not banal. This work  [ download ]  presents a new fixation identification algorithm based on the analysis of variance and covariance: the main idea was to use bivariate statistical analysis to compare variance over x and y to identify fixation. We describe the new algorithm, and we compare it with the common fixations algorithm based on dispersion. To demonstrate the performance of our approach, we t...
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Relationship between the modified Rankin Scale and the Barthel Index in the process of functional recovery after stroke

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The modified Rankin Scale (mRS) and the Barthel Index (BI) are the most   common clinimetrical instruments for measuring disability after stroke.  This study  [ here ]   investigated the relationship between the BI and the  mRS at multiple time points after stroke.  The BI, which is a widely used instrument for longitudinal follow-up post- stroke, was used as   reference to determine the effect of time on the  sensitivity of the mRS in differentiating   functional recovery.  Methods :  Ninety-two patients with first stroke and hemispheric brain  lesion were evaluated using the BI and mRS at 10 days, 3 and 6 months.  The Kruskal-Wallis test was applied to examine median differences in BI  among the mRS levels at 10 days, 3 and 6 months with Dunn's correction  for multigroup comparison. The Mann and Whitney test was used to  compare median differences in BI scores between two a...
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Understanding Anaerobic Threshold (VT2) and VO2 Max in Endurance Training

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  Introduction: The Science Behind Ventilatory Thresholds VT1 vs. VT2: Defining Energy Transitions p (Aerobic Threshold) : The transition from lipid metawwwpp (fat-burning) to a mixed metabolism, where both carbohydrates and fats fuel muscle activity. V0T2 (Anaerobic Threshold) : The point where the  shifts to a predominantly carbohydrate-based wmetabolism , leading to rapid lactate waccumpulation and increased reliance on anaerobic energy pathways. www w In p VT1 and VT2 Wwww ewAgep & Sex Younger athletes generally exhibit higher VT2 values , while aging naturally reduces aerobicw capacity. Men tend to have a higher VO2 Max due to greater lung capacity and muscle mass, but women can achieve similar endurance levels through optimized training. Body Composition & Health Status High body fat percentage may reduce VT2 efficiency, as excess weight increases ...
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Owen's Function: A Simple Solution to Complex Problems

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Definition   If you are interested in statistics or probability, you may have encountered the Owen's function , a special function that arises in various applications involving bivariate normal distributions. Let’s explain what Owen's function is, how it is defined and notated, and why it is useful.  The Owen's function is defined as follows: for any real numbers h and a, Owen's function T(h,a) is given by T ( h , a ) = 1 2 π · ∫ 0 a exp ( - h 2 2 · ( 1 ...
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Cell Count Analysis with cycleTrendR

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  1. Introduction Long‑term monitoring of adherent cell cultures (e.g., Vero, MDCK) is central to vaccine development, viral propagation, and QC workflows in CRO environments. Standard analyses typically focus on short‑term growth metrics such as doubling time, confluence progression, and endpoint viability. While informative, these metrics overlook slow drifts, cyclic environmental influences, and structural transitions that emerge over multi‑day or multi‑week monitoring. Operational routines (e.g., weekly medium changes), environmental oscillations (e.g., daily temperature cycles), and metabolic rhythms can introduce periodic components into cell‑density trajectories. These patterns are rarely analyzed explicitly, despite their potential impact on viral yield, infection kinetics, and batch‑to‑batch reproducibility. This post demonstrates how cycleTrendR can extract long‑term trends, dominant cycles, and structural transitions from a realistically simulated adherent cell‑co...
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